How a Physicist Outsmarted Biology with Quantum-Inspired Math

In today’s episode, hosts Candace Gillhoolley and Frank are joined by Dr. Marvin Weinstein, emeritus particle physicist at Stanford and co-creator of Dynamic Quantum Clustering (DQC). Marvin pulls back the curtain on how a quantum mechanics-inspired algorithm, running on ordinary computers, is revolutionizing how we detect patterns in complex biological data—specifically brain cancer.

You’ll hear the fascinating story of how Marvin, driven by personal loss, dove into decades-old, heavily-studied cancer datasets with DQC and uncovered new, highly accurate tumor classifications and biological insights that even seasoned researchers had missed. With a unique approach that’s completely data-agnostic and unsupervised, Marvin demonstrates how physics thinking can spark breakthroughs in biology, identify clusters with over 99% accuracy, and potentially pave the way for more precise cancer treatments.

This episode is a quantum-inspired masterclass—no PhD required, just a curious spirit and maybe a strong cup of tea. Whether you’re a technologist, scientist, or just love a good intellectual thrill ride, strap in as we explore how the boundaries between quantum theory, data science, and medicine are blurring in stunning ways. Stay tuned, stay entangled, and let’s get under the hood of quantum-powered discovery!

Timestamps

00:00 “Quantum Inspired Data Science Masterclass”

04:17 Exploring Old Glioma RNA Data

07:49 “Gene Analysis Optimization Strategy”

11:11 Adaptive Dimensional Analysis Success

17:29 Collaborative Breakthrough in Problem Solving

18:54 Reducing Function Sensitivity

22:03 Quantum Tunneling Enhances Data Analysis

28:35 Gene Expression Clustering Analysis

29:35 Gene Expression Standard Deviation Analysis

32:52 Undiscovered Insights in Brain Cancer

35:59 Prescriptive Algorithm Understanding Limitations

41:23 “Interpreting Biological Processes as Evolution”

42:26 Tumor Analysis and Drug Selection

47:09 Discovery Surprises Collaborators

49:06 Interdisciplinary Innovation in Precision Medicine

52:30 Orbit Calculations and Perturbation Theory

55:33 Exploring Lattice Theory and Applications

59:14 “Cheers: A Toast to Joy”

Transcript
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Welcome to Impact Quantum, the show that peeks under the hood of

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quantum computing to reveal what's emerging and why it

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matters. Today's episode is an absolute masterclass

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in quantum inspired data science, with a guest who

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quite frankly makes the rest of us feel like we're still stuck figuring

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out long division. Joining Frank and Candice is Dr.

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Marvin Weinstein, emeritus at Stanford University,

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bona fide particle physicist and co creator of

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dynamic quantum clustering, a method that

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sounds like science fiction, but delivers real world,

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potentially life saving insight. Marvin takes us on

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a thrilling journey through brain cancer research, data

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agnosticism, and how a physicist wandered into

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biology and found patterns that even seasoned

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researchers had missed. This isn't quantum computing per

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se, it's quantum mechanics inspired analysis applied with

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surgical precision minus the surgical gloves.

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Whether you're a curious technologist or just here for the

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intellectual thrill ride, this one is for you. And

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no, you don't need a PhD to follow along. Just

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curiosity and perhaps a cup of strong tea. This episode

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is rated 5 Schrodingers. So buckle up and let's get

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into it.

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Hello and welcome back to Impact Quantum, the podcast where we explore the

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emergent fields of quantum computing and

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the upcoming ecosystem that is going to spread around it.

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So you don't need to be a quantum physicist, but you do need to be

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curious and curious about quantum computing. And with me today,

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as always, is the most quantum curious person I know, Candace Kahuli.

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How's it going, Candace? It's great. Thank you so much for asking. I'm really

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excited about today. Yeah. So I think today you actually have

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an honest to goodness physicist here on

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as a guest. Absolutely. Amongst many things that

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he's, that he's doing, I can say that he is a particle physicist at Stanford

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University as well as,

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as well as the CSO co founder at

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Quantum Insights Incorporated. He's got a lot, a

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lot of experience and a lot of great knowledge to share

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to our audience. I think everyone's going to find him as fascinating as I do.

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Cool, I hope.

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But I am a genuine quantum mechanic. That's right. There you

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go. So please welcome everybody, Marvin

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Weinstein to the show. How's it going? It's

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going well. As I was telling Candice, you got me in a very

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excited state today, so I hope I'm coherent.

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Awesome. Yeah. In the virtual green room, you had said you kind of

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uncovered something very interesting. So we can start there if you

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like. Well, yeah, I mean,

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basically the thing we were talking about

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during the previous interview was a tool that was Developed that was

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what the company was founded for, to apply the

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various problems. And it's called dynamic quantum clustering.

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And it differs from other clustering

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algorithms, other data mining tools, in that it

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is completely unbiased. You can take a first look at data with

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making no assumptions about if there is anything to be found in the data,

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cleaning the data or

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labeling it in any manner, shape or form. You just look at the raw

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data. So

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for personal history reasons, I mean, Candace was telling me about somebody

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she knew who partner had

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died or father had died of a brain tumor. But

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my first wife also died of glioblastoma.

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So when Quantum Insights decided

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to close its doors, I was sitting with all of this data from the Cancer

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Genome Atlas, including all of its glioma

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data. That means all low grade gliomas and

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glioblastoma data. So I had RNA sequencing data

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for all of those tumors. And basically

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I decided first thing I want to do with it is take a look

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at it and see if there's anything to see in that

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data that I mean people have looked, this data set's old,

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so it's been around for a long time, has been heavily studied.

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People were totally sure that everything that there

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was to be extracted from that data set had been extracted from

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that data set. And so basically

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I said, well, nobody's looked with our tool.

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And so what did I do? Well, the first thing was, as

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I promised you, I simply loaded up the data. I did

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restrict the gene expression from the 60,000 genes

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that it comes with down to what everybody believes is

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the 20,000 so called protein coding genes.

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Not all of them code for proteins, but they're the list

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that various tools

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restrict to. So I wanted to stay within what other people were doing.

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So I looked at those 20,000 genes. Well, that's a lot of data. I mean

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that's a lot of noise. It's actually not a lot of data. It's only 600.

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I mean that's always a misconception. People say biologists have huge data

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sets. They really don't. I mean, for example, all of the

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cancer data is 692

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tumors, brain cancers.

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That's not a big data set. There's only 692 pieces of

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information. I don't care that there's 20,000 genes

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because all you're seeing is the effect of 692

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combinations of the expression levels for those genes. The whole

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data set can be reproduced from those 692 pieces

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of information. So

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not like a physics data set which has Millions of

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samples and stuff to look at. This is a biology data

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set and typically restricted to a specific disease.

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It's not huge. What it is, is

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complicated and really hard to see what's going

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on because there's so much noise.

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So first thing I did, as I said, was restricted

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the raw data. It's a matrix after all, rows

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and columns, okay? Every row is the expression level

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for 20,000 genes. I'm rounding the numbers off. You don't

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want the 20,312 all the time.

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So it's that. And there are

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692 rows in all. You feed that into DQC, it's

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made to ingest that quickly and you do, you just

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simply run the first analysis and surprise. The first thing you see

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is there's a whopping big signal.

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In fact that data, raw, unprocessed,

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unlabeled, untreated in any way, no

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training set, separates into two clusters. One

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very large cluster which is mostly the lower grade

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gliomas, and another cluster which is

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almost all of the

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glioblastomas. Well, that's pretty

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cool. There's already a signal. It's not the best classification

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in the world. Maybe it's very good, it's competitive.

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But DQC has a standard trick which is

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you can pick out a smaller number of

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genes to look at, in this case a smaller number of features in the

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fancy language which

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give the same information. And so first run at that

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produced 544genes and exactly

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the same picture. So I didn't have to look at 20,000, I

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had to look at 544 which were doing most of the heavy

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lifting, produce the same two clusters,

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same, not wonderful, but pretty good classification

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scheme. Then there's another DQC based trick

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which is using the information in the two clusters, now

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I can order the genes that I'm looking at, the

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544, in order of their

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importance to the signal.

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Then I look the first 10 genes, the first 20 genes, the first

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30 genes, and I did those analyses over and over. Each time I did

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it starting from 10, I got a pretty good

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classifications. 20 made it better, 30 made it better

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until I got up to 90 genes and then at

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100, 110, 120, everything

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stopped getting better and started to get worse. Interesting. So the

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cutoff interesting was I wanted to look at the 90 gene signal

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because the cleanest information was going to be in the 90 gene

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signal. Did that and sure enough I find

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four clusters. So what are the four clusters? Three of

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those clusters are all low grade gliomas.

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100% low grade gliomas. They

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capture all of the low grade gliomas

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except for four tumors. The

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fourth cluster is all of the glioblastomas and

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those four that were not captured. Now remember,

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there were 692 tumors, I was missing four.

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So when you look at them plotted in the space,

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let's call it PCA space. You like that word? And it is the

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PCA space for the tumor expressions. Those four

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lie right next to the gliomas, whereas all the other data lie far away from

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the gliomas. Just for folks that may not know

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what PCA is, is it Principal Component

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Analysis? Principal component, yeah. PCA

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is a way of rotating the data so that

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the dimension of the data in which

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the data is most spread out is the first dimension. The dimension

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in which the data is next most spread out is the second.

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It tends, if you're lucky in low dimensions

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to show you what you need to see in order to

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try to do clustering. Because most clustering algorithms

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deteriorate rapidly as the dimension of the data goes

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up. So they like to do a hard dimensional reduction, they

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call it to two or three PCA directions

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and then try to cluster based on what they see there.

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There are algorithms which work in higher dimension, but,

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but still there are things they struggle with.

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DTC doesn't really care. It doesn't start with a hard dimensional

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reduction. It simply works

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with, with what is showing the most information. If it's 6,

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if it's 10, if it's 16, if it's 50, that's fine, I

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don't care. I'll, I'll work in that. The only impact

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and price I pay is the time it takes to run the algorithm.

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But, and so the usual trick is you work in the lowest number

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of dimensions that appear to be noise free,

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which you can tell by looking at the spectrum that you see in pca

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and then work your way up to twice that number of

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dimensions and look again and if you see the same information,

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well, it's quicker to run everything in the lower dimension, but

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you don't stop if you see a change. So

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at any rate, Granite, I got these four clusters.

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Now you notice the only misclassification out of

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692 tumors is four tumors.

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So a considerably less than 1%

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failure. Of doing close to like

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1/7 of 1%, would you say? Yeah, yeah, yeah.

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So I mean that's, that's, I'm trying. To quote the worst possible

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statistic that I can imagine, but less than 1%. We can all

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agree on. So that would put it at over 99%. If I tell you

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from this analysis you have a low grade glioma, I'm

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100% accurate. Right. If I tell you you have a

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glioblastoma, I might be as much as

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2 1/2% inaccurate on just glioma question

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that's better than world class. Let's say what's current state

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of the art is closer to like 80, 20. 19 around trying to

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say how do we compete? And I haven't succeeded yet. My

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collaborators, one bioinformaticist at

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Wisconsin and a cancer doc at Stanford,

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are going to have to help me with that. In searching the literature, what

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I find are statements like most schemes for

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doing this, unsupervised from

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the raw data and then moving on from an internal

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analysis. Still working, starting with the raw data,

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what they call the area under the curve. So the likelihood you're right

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is 70 to 80%.

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Interesting. So we're not talking anything like the same. There

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are some special biomarkers. If they're found

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on a glioblastoma, then people are pretty sure

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it's a glioblastoma at maybe the 1% level.

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Okay, but separating

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glioblastoma from low grade gliomas, blind,

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they're nowhere near that good.

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So at any rate,

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that's what I found. I now have the world's best classifier.

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In 90 genes, I plot the gene expression levels

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for each one of those clusters. And for most of the genesis

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I see the genes either fall into the category, the

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expectation for the expression of that gene

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for the either goes systematically up through

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the four clusters, going from the lowest grade glioma to the

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glioblastoma, or systematically goes down. That's

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what you want to see. Those genes are involved in what's happening,

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but there's still 544 genes.

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And I can't see the forest for the trees.

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Interesting. So does this inform treatment options?

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Well, that's the problem. Treatment options, or at

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least my understanding. So remember, I have to be

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very upfront. I'm not a biologist. Right. Everything

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you will hear me talk about, I learned by looking at this data. I have

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nothing formal training in biology whatsoever,

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so you're dealing with a novice. It reminds me of the

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the original Star Trek show where Bones would always like, I'm a doctor, not an

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engineer. Like you're like, I'm a physicist, not an engineer. I mean a doctor, you

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know. So what, what initially inspired you to take

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all of your quantum mechanics Knowledge and, and, and

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apply it biological data. Yeah, so remember I'm the

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co inventor of this algorithm. The other inventor is David

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Horn, Tel Aviv University, a frequent visitor to

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Slack. He collaborated on many physics

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papers. And Slack is not the

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messaging app. It's Stanford Linear Accelerator. Is that right?

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No case Stanford. It used to be called the Stanford Linear Accelerator

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Center. So I'll tell you out of school the story which

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reflects wonderfully on the doe. At some point the

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DOE wanted to put its name on everything

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and trademark it.

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Well, Slack said, because Stanford said you can't trademark

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the Stanford Linear Accelerator Center. It's us, right?

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We run the place. So DOE made

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SLAC change its name to SLAC S L A C

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and call it the SLAC National Accelerator Laboratory. So I guess

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as an abbreviation we're now Snal, not Slack.

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Slack sounds better. I grew up with it as slack for

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42 years. To hell with the DOE. I don't intend to

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listen to what they want. But it is now officially the SLAC

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National Accelerator Laboratory. Right. So at any rate,

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David Horn came into my office and life went as normal. He said, oh, I

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have something interesting to show you. Because he kind of had left high energy

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physics about eight years earlier and was looking

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into data mining. And he said there this cool idea

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that grows out of

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something done by somebody called Emanuel Parsons, called the Parsons

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estimator. And I figured out I should think about it as a

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quantum potential. I already was very

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suspicious. It sounded like a very strange idea.

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And so we did our usual thing. We stood at the blackboard and

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yelled at one another for three or four hours. And

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then we came to a meeting of the minds and said, this really isn't the

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stupid idea. It's kind of cute. And

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you know, David said, well, he showed me some simple problems

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having to do with classifying crabs. It's the standard

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old problem that people did

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and seemed to be very interesting.

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He said, but the problem is in order to understand who's

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so the what, the idea behind it is very simple. You take

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all the data, you create a function. The properties of this

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function are wherever there's more data

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than it is in the surrounding, there should be a peak. And

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wherever there's less data, there should be a value. The problem is,

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of course, the way you create that data is very sensitive to a parameter that

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you introduce. Okay, I don't want to get too

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messy in this. It's all published so it can be

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read and the sensitivity is hard to

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deal with. So what we finally

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understood was if we treated this. So this

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is just a professional deformation.

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Because we're particle physicists and quantum mechanics,

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we think of everything as having something to do with particle physics.

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Quantum mechanics. This problem has nothing to do with particle

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physics or quantum mechanics, except we want to get rid of the sensitivity of

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that function. And we said, if you think of this as the solution to

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a problem in quantum mechanics, that problem has a

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term having to do with the particles moving around and another

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one having to do with the landscape it finds itself in.

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That's called a potential function. It turns out

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that potential function always has sharper

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features, more pronounced dips

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than the solution, has peaks,

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and turns out to be much less sensitive to the parameter that goes into

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building that function. So, literally, by

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saying, what problem is this picture,

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the solution to which turns out to be

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trivial to solve what potential function,

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you get a sharper picture. And the sensitivity, the parameter used

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to build what's called the kernel function, that potential function

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goes down by a factor of 10. So you have a pretty

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unique answer. It's easy to arrive at. You don't have to be careful about

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picking your parameters. The problem is if

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you think of this as things living. So we have these

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valleys now where the bulk of the heavy

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concentration of data is, or we have stream

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beds, but the data is up along the

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walls as well as being down in the

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valley. So the question is, which data belongs to which

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valley, which stream bed, et cetera.

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And so you want to move the points down the sides of the valley

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and have them collect in whatever structure is at the bottom.

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Well, people try that. In fact, my

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colleague had been trying it. And as the dimension goes up,

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for reasons we understand, that

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surface becomes rippled just due to noise.

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And so basically, if you try to just move things

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down using ordinary calculus, what's called gradient descent,

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you're just moving points in the direction of the slope. They get

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stuck in the ripples. Oh, I see. Because

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it can't find the global minimum. It can't find the important

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minimum. Right. If things move according to quantum

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mechanics, all bets are off. It's a much nicer

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story. And it's the uncertainty principle, which made the

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solution wider to begin with. So we're going to

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exploit the uncertainty principle. If I move points

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according to the laws of quantum mechanics. The first thing is, unlike

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gradient descent, the quantum wave function extends out to

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where the valley starts going up again.

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So points automatically start to slow down as they

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reach the minimum. And they don't overshoot and

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rattle around, they just stop because they see now

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equal influence from Both walls and therefore no

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force. Also they don't see ripples because

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the uncertainty principle allows for quantum tunneling

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and they simply go through those tiny ripples or ride above them.

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So as a way of making the data move

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and find the minima in the function in any number of

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dimensions and as a way of speeding up the

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analysis, because quantum evolution is done by matrix

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multiplication, so it's enormously

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parallelizable. Didn't say that very well.

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Parallelizable, you get a very quick algorithm

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that is using physics principles. But to solve a non physics

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problem, just getting the points efficiently down to the bottom.

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If there is a riverbed that tells

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you something about the data, says there's some one parameter

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thing, some regression on the data that you can do to

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something that's very extended. It's a huge discovery.

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It's much better than finding simple clusters.

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But that's what this does. So DQC has

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advantages. One, it doesn't require training sets.

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So it's great for biology data because having annotated

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training sets that are really good, hard to combine.

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So this is interesting and what does DQC stand for?

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Dynamic Quantum clustering. Meaning we're using quantum mechanics.

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The find the minimum. Now do you need a quantum computer to do this

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or this is just an algorithm? Interesting. I told you I'm here under

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false pretenses. You asked me here to talk about quantum

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computing. And I told you I don't do quantum computing. I'm talking about using

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quantum mechanics to run on an ordinary

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computer. Could it run on a quantum computer? Yes, if

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they were really as fast and as good as they say they're going to be,

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would even be better because it can handle bigger. I'm

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focusing on biology, by the way. Way this algorithm is data

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agnostic, right? It's not talking about

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biology per se, it doesn't care. It just says that

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there's something interesting. Data is not distributed with

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equal density every place. Things that are more like one

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another tend to be located in a more dense region.

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Okay, so and this has been applied to many things. It's been

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applied to

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finding radioactive sources in the city of Chicago hidden

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in a building. Okay, it, there's a paper that I wrote on

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that it's been applied to. I guess

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there's no paper on this, but it was a problem I did for somebody

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finding

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tanks in the desert that have been camouflaged, painted,

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same thing using the data from a

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multispectral hyperspectral camera.

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So it doesn't care what the data is. It's data agnostic

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it's feature agnostic. It is

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unsupervised completely. That doesn't mean that you don't use the results

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of a previous analysis to now supervise the next analysis

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based on what you learned. You do do that.

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But at any rate, that was it. So what's now

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going on is, as I said, we have the world's best

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classifier. But I don't know how to tell you what the

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best drug for your tumor, the one that's most likely

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to work on, the biology that's happening now, should

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be. And that's why I need to go find a biologist and they're

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not so great at doing it either. So witness how

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many people go through many, many failed drugs. Yeah,

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well, precision medicine is definitely, you know, one

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of, one of the, you know, one of the biggest outcomes of using

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this type of, this type of clustering that

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we can, we can create. I mean there's so many, there's, there's just, there's

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so much out there that needs this type of, you know,

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this type of. Still in its infancy. It's got a place to go to

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be precision medicine. Where do you. Oh, go ahead.

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Oh, please don't let me. What you have to say. I was going to say

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based on dynamic clustering, quantum clustering,

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you know, where do you see it evolving in the.

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So I'll finish telling you this story about why I'm excited because

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I think it's evolving to a really. I, I've

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seen something today I never thought I would

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see. So last night it showed up at 10 o' clock

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in the evening and I'm still digesting what I saw.

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What I show you, you should take with a grain of salt. But there's no

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question, there's zero chance that I'm wrong in terms

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of what you'll see. Okay, so the way

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docs like to look at the problem or cancer

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researchers is they talk about so called

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biological pathways. Biological

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pathways are sets of genes

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which carry out some process. In the end, all processes

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are making proteins, but we're not looking at the proteins being

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made, but we know these sets of genes are

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functioning together to produce an interesting

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output. So if I can

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take the information I have and find

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a way of saying, oh, so in fact what I'm

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seeing is actually predicted by the following

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set of genes. And I can assign

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meaningful coordinates to each tumor

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based on where they are and what that set of

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genes is doing together. I mean, biospace,

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a point in that space depending on how many

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things still I'm producing. One axis in biospace

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and it's representing a process which is

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happening in the patient where a bunch of genes are

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telling me something, not one. And

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that bunch of genes I can look at and ask what are their

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properties? What are their common properties?

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So I will share something with

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you. So at any rate, did that.

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Okay. Went to biospace using DQC

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methods again. Remember I told you I had four clusters. So

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there are six pairs of clusters which

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differ in how the genes are being expressed in those clusters.

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So I can find the most, the list of the most important ones between

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1 and 2, 1 and 3, 1 and 4, 2 and 3,

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2 and 4, 3 and 4. So

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six possible axes

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in biospace, the sets of genes that are most important.

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And then using those axes which go from minus something

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to plus something, I can assign a coordinate to every one of the

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tumors. So I have points in a six dimensional space.

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Okay. The way that's done,

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it's done in a way such that zero on

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that axis means that for that set of genes,

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that point is consistent with what the value for

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all of the genes in that thing. The average value of those genes

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is. Plus means you are moving

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x standard deviations away from

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being at the average expression. So I don't need to know what the

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normal expression of a gene is. That's always one of the

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problems. You rarely have data for normal

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cells of the same type as the tumor.

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And so you don't know where to set your zeros. Here I'm doing it by

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the average and I'm saying how far from a standard deviation am

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I out one way and how far out am I the other way?

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And so you plot the same tumors.

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Now I have to remember what I do. I go to share

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share the screen. So you plot the same set of

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tumors. Now you see my background. Yes. And I am going to

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switch over to the computer in my basement and show you a fun thing.

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So the axes you see here are

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DQC's plotting of

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the cancers in a six dimensional biospace.

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But I want you to see, blues are glioblastomas,

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reds are the lowest grade gliomas,

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magentas are the next lowest grade gliomas.

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And the goals

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are closest to the glioblastomas.

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Interesting. Now I told you this is an animation. We're going to start the points.

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This is how the QC works. Okay. So we're moving the points

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downhill.

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You like that? Yeah. So it's all. What's

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happening, they're all converging into one like a

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regression, right? Right. There's a one dimensional

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shape. The healthiest tumors, they're not

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healthy, but they're the healthiest. They're not the least awful.

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Yeah, the least awful. So if I look at for this.

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We already saw that when we analyzed the. So the colors

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here are the clusters that I discovered

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in RNA sequencing space in what we call

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gene space.

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They've just been arranged in a line from best to

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worst. So blue is the worst. The

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glioblastomas over here. Okay. Okay. So

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for those listening, don't worry, we're gonna link in the show notes to a video

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representation of this. Interesting. At

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any rate, this is what you see.

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So the. This is the plot in bio space. Now that's very

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interesting because these have the dimensions of the bio coordinates

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and those coordinates have a meaning.

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Okay. In fact, I'll tell you what the meaning is. And this is based

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upon a set of data of patients.

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Yes, this is 692 patients.

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That data was submitted to the cancer genome project. Okay. Oh, so this

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is open source data that you're pulling. This is absolutely open source.

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What my company did when we existed, because we had various

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projects going and things like this, we downloaded all of

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that data for the RNA sequencing data and as much

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as we could find about each of those tumors, which was

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not a hell of a lot. But there's something, It's a good

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database. As I said, it's been studied for years and years and years.

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So this is results obtained by starting from no information

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and just relooking at the brain cancer data

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and saying, people have been studying this forever. Did they ever

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find anything like this? And the answer is no.

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This has never been discovered. This has never been discussed. So

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using traditional analytical sources,

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you could not. Whatever. You could not get at this information

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without doing the. The dynamic

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because you make a lot. Of assumptions about what you're supposed to look at. You

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make a lot of assumptions about how you filter the data.

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You end up throwing the baby out with the bathwater.

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Go ahead. No, you also said you didn't do any cleanup of the data. Like

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that's just the wrong. No. Well, I mean, they've cleaned it up obviously. Obviously at

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some level. But we're not doing the post. Whatever they

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did cleanup that people normally do where they filter out

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genes, where they have this gene should be expressed at

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least at this level. All genes that aren't expressed at that

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level we're throwing out of the data set. Okay.

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If I see a difference between two

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clusters and the genes are expressed differently in the two clusters,

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but what they call the fold value isn't big enough.

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I'm throwing it out of the data. Well, you can imagine

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if there's hidden information in the data and you're busy throwing things

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away, the chance you throw the baby out with the water bath water

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is very high. Exactly. And

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that's exactly what this shows. The benefit of going in

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unbiased, unfiltered,

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completely agnostic. Look to see if there's a signal first.

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And then when you see the signal, which I did. So stage one is,

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wow, there's a signal. Stage two, what is making the

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signal? EQC is built for solving those

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problems. Right. So basically, and

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that's where it differs from AI, okay, AI needs training

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sets for the most part. There are

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versions of AI now that claim not to, which

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are real. They make up data in order to train

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the data. There aren't enough training sets.

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So what you do instead is you make up artificial data and then try

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to teach it to reconstruct the real data.

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Okay, by by picking the parameters in the artificial data

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and then you try to classify existing data.

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But it's a different story here.

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Everything is understood. The algorithm is totally

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prescriptive. I know exactly what's going on.

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There's no mystery. Once I find something

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and we ended up, I just showed you with this concept of

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biospace, which is what

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people in literature, it turns out that's where the idea came from

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to look at it this way, what people were

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talking about as latent coordinates in the data.

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So there are people doing AI that say, oh, I'm going to keep feeding

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AI from this and AI is going to reduce my problem to

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some low dimensional manifold and I'll call that a latent

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coordinate picture. But then I'm faced with the problem. I don't really know

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what the coordinates mean. I am busy trying to interpret

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them and I certainly don't know how to exploit them.

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Different here. Right. So we started with no training data.

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Am I looking at here? Shouldn't be showing

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you this, but my, my collaborators say I can show it to you.

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So here are the axes. So what do

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you know from these axes? Well, the

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genes in this axis have, as I

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say, tumor associated fibroblast activation,

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their immune checkpoint genes

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signaling chemokine driven inflation, the pathways that are

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being recruited for this or that. Basically

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here it says if you want to

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change overexpression or under expression, you want to look at

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the drugs which do the following thing.

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There's one such description for every one of the six axes

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they have A meaning. And so if I simply look at the

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coordinates and biospace and see which. Along which of these

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axes the biggest signal lies,

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that's the first set of drugs you try on the tumor.

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So by looking at in biospace and how the tumor

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evolves in biospace,

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that's what this is, right? The evolution of the tumor

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in biospace. Every one of these points, after all, is a

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snapshot in time of the tumor at that point.

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What this suggests is it's a continuous

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evolution to glioblastoma through these

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biological processes. And as they change.

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So you're seeing the. So basically, what

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have I learned? God is showing me, or biology is

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showing me how the tumors evolved in

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time.

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Interesting. I don't know. That doesn't. So do they all start out

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as like you showed that image again, but

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the one where they're all on the same plane, the one that we're all

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on the same plane. This is the

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snapshot and survival term for the patient because that's what

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is changing along this curve. We already saw that. Oh, I see. So

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this had different survival times. So these are all

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tumors. I don't know where healthy is.

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Okay. So not everybody starts out, for example,

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you know, in the red. And then basically

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they probably do. Okay.

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Glioblastomas have to be. If you look at them in terms of their gene

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expression patterns, they're a mess. Okay.

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They've undergone many mutations to get where they are. And the more mutations,

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that's the different colors, basically, and they change. Okay. So

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everyone starts out maybe with the red, but not everybody

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goes all the way to the blue. Purple. Right. And they probably. Everybody probably

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starts out to the left of the red. Right. Because these

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tumors probably form at the single cell or small number of

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cell levels. Okay. And take 10 years to grow.

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Okay. The first show up and be seen. Okay. So

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it's not. We don't have examples of the earliest

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version. That's the beauty of what. What's blowing me away. Yeah.

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Don't need to know any of this. I don't

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have to know. I only need the gene expression pattern

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and I only needed the information about survival time to

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interpret the axis. Everything else came after

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I found the axes when I had to interrogate

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pathway databases to find out what they do.

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And truth be told, I asked an AI to give me the

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information about that because it's a pain in the ass to

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go through those things yourself. So we could use. And I just

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wanted to know what I might see. This is not to be taken

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seriously. Okay. Because My, my

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biologist and my doctor friend are going to have to do the job

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of vetting what these interpretations. I only trust

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AIs a little

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bit. It's sort of fun to do that. Okay.

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But what I wanted to give you was a feeling

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for the difference between biospace information

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and simple single gene information. Okay.

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And it's awesome what the difference is. And

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it's awesome that there's a progression in

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biological processes that lead you to

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glioblastoma. I can't tell

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you this actually represents evolution,

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but if it looks like evolution and it smells like

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evolution and it wax like evolution, it's

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evolution, okay? I mean that's just my feeling.

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Now I've already given you all the I don't know any biology,

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do know a lot of physics, do know how DQC works.

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Okay. I know that better than anybody. But this

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business that you can take the information that you learned in

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the genetic right, in the single gene

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basis and convert it to biological

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process basis and learn entirely new things

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more suited to advising doctors who are treating

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cancer patients. Because I can take a new

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tumor stuff and put it on that plot, see where it

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is, see what its access definition is

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and see what the likely best drug is to start with. And

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then if that doesn't work, drop down to the next most likely. The next

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most likely. So

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basically that sort of we can stop sharing actually

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now, which he says I can stop sharing.

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Okay, great. So you know why I'm

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in this befuddled state at the moment? Because I am still

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absorbing what this is telling me. I certainly never expected

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when I thought of trying that because people talked about these latent

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variables and hidden dimension, hidden coordinates

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and describe ways that might work. I didn't see any

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examples actually worked out. This is the

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story from beginning to end

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genetic coordinates to discovery

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to the world's best classifier to changing that into

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bio coordinates discovered from the genetic side.

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The treatment options, a tool for helping doctors treat,

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for suggesting to cancer researchers new experiments to

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do to verify what they're seeing on this.

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Lots of suggested. I alone with no knowledge can think

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of 10 things people should explore based on this. And

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drug companies want to know what the next set of things

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to target should be for a given disease.

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Wow. I think that's pretty cool. That is

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impressive. So it really is. You know,

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DQC is telling me the data is whispering

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to you. I'm the tool

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that'll teach you how to listen.

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That's the way I feel about it. Since it's my baby, it's grown

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up, I really think it's grown up and

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I'm very impressed with where it got. So you're getting me in my

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very biased statement for it. Oh, we can tell it's super, super humble. But

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no, it's really. It's really exciting. But also to see where it can

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be taken from there, you know, like, this is just the beginning.

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The. There's so many scratching the surface. First place, those

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axes could be improved because there's more than one

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set of genes that give similar information

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how to exploit it, how to do the bench experiments.

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That's not me. I don't know that stuff. And I'm

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83. I'm not ready to start learning how to be a bench

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biologist. Okay. But

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it's. It. It's just so cool. I mean, you know, it's

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like you've seen the underbelly of what's happening in the biology.

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At any rate, I don't know if you agree with me, but I think it's

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really cool. No, that is really cool.

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There's a lot to take in. I'm sorry about

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that. No, no, I mean, you know, we have a scale system for these

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shows, right? Like five. Five. What is the five Schrodinger.

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Schrodingers, yeah. So we have, like from zero to five Schrodingers. This is definitely gonna

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be a good five Schrodinger show. Like, and I was able to follow on because

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I was a d. Data scientist before this. So, like, when you

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said pca, like, I knew what you were referring to at least. I.

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But like, so, like, it was like, this show is really geared towards the

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quantum curious. Some of which will be data scientists, some of these will be

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marketers, some of those will be, you know, kind of traditional software engineers,

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et cetera, et cetera. Marketers. Right. Because it's our thesis that

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when the quantum computing ecosystem comes around, and

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indeed, I think what you've proven today is you don't really need

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quantum computing to take advantage of the

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innovations in quantum science. Right. Like. Right.

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I think that was an assumption I think Candace and I had. I don't want

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to speak for Candace, but I know I certainly did. But I know that there

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is a field called quantum inspired algorithms, which is probably.

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That's sort of what this falls. Yeah,

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but it's just exciting

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that innovation like this can come about in such a way that

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it's going to improve people's lives. What you've discovered is

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I'm not a biologist or a doctor, but I would imagine that a doctor or

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pharmaceutical Researcher would look at that and say, oh, you know what this means? This

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means xyz. I hope so. I mean, I mean

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I'm pretty much at the limit of what I can do even

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with collaborators on our own. The, the point

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we're writing the paper now. This is, I've already blown

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my collaborators out of the water because this was discovered last night and they

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don't know about it yet. I have their permission to talk

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about it though, so that's cool. It's,

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you know, so I, I, I'm glad you liked it and the five

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shortinger level because I'm only here because you guys refuse

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statement. I don't know anything about quantum. Well, I, I do know something about quantum

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computing but I am not a quantum computer person and

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so I didn't belong on your show but you kept refusing to let me off.

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But I mean, I think it's important that people think about like this is not,

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I think one of the things that obviously you're, you're, you're a great

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presenter and great teacher of these very

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complicated topics but you've also something to figure it out. Plus I also think it's

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important for people to realize that quite quantum physics and research in that

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space is already improving people's lives or at

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least already showing fruits of that. And

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I think that your research kind of shows that. It's like, you know, you don't

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have gen, you don't have the billionaires facing off over, you know,

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Jensen saying it's going to take 20 years, Bill Gates saying it's going to take

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less. Right. I mean this is pretty basement

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and the data is free. So I think the other lesson here

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is we have a wealth of data that's under explored

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because looking at it in an unbiased fashion hasn't been done.

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Right. So I have lots more diseases I want to look at

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and I have all this TCGA data for

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pancreatic cancer and various other

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cancer and so

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it's sort of fun, right? I like how you kind

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of mix, you know, I know you say you weren't appropriate, but I think you

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were totally appropriate for the show and you've got the physics

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background when you're talking about quantum clustering,

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why it's affecting the biological,

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giving us biological data that we're able to move forward with

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potentially for precision medicine. I love the

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bridges that are being created all over

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the place here that you're not just kind of stuck in one thing thinking you

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can only do one thing because you have a certain amount of knowledge but how

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you've bridged that to bring in all of this

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biological data information, I think it's

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fantastic. I'm very happy that you came and you joined us today.

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I learned. I'm glad I didn't bore you and I hope I didn't get too

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far into the weeds, which my wife accuses me of doing all the time.

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Mine too.

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Where can people find out more about you and what you're up to?

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Me and what I'm up to? Well, I'm on LinkedIn. People contact

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me through LinkedIn all the time.

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I have a long history and you know, if you go look at

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the archives, the physics archives. Physrev. Physrev A.

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Physrev B. I, I mean my, my past history is a little

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eclectic, even in physics, which I attribute to having a

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short attention Spanish. But I started in

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particle physics. In phenomenology means looking at data,

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trying to understand what it's telling me. I moved into

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pure abstract particle physics

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and then I went into what's called lattice field theory and lattice gauge

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theory, which is trying to learn stuff from

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how to say this. Didn't expect to talk about this. So,

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so let's talk about how we do physics, which is another

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totally off topic thing. And you may be running out of time. I don't know.

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You tell me when I have to shut up.

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But the, the, the story is

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physicists are smart, but there are very few problems we know how to solve

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exactly. Only a handful.

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Everything else is done by a process we call perturbation theory.

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Mathematicians also call it perturbation theory. You say, well, this

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problem that I know how to solve exactly kind of looks

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a little bit like this other problem, but with some

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modifications. So let me add the modifications to the problem

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and try to calculate corrections to the answer

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based on the modifications. So I have the original problem

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set and forces involved and the changes in those

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forces a little bit. And then I calculate

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perturbatively what's happening. People do it in

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celestial physics all the time. I have this

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planet moving around the sun in an elliptical orbit. Oh well, but

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there's the moon. So how does that affect the orbit?

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Well, I can't solve that problem. That's already a three body problem.

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And there's no exact solution to the three body problem by the time

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it's also got Mars and Jupiter and

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Saturn and Pluto and Mercury in the problem.

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I can't plot orbits. But people do it all the time.

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NASA plots orbits. How do they do it? They calculate

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the original orbits and they Start calculating the effects of Mars

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and this and that on that orbit, because we know what those

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forces are if Mars is on its orbit. And through

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successive corrections, successive iterations, you're

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able to make the small perturbations in the orbit that get the answer

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right for you and eventually lets you send something to the moon

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and not miss. Okay,

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so perturbation theory is, is what we use. But what is perturbation

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theory based on? I have a solution, I know how to get

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exactly. And I know how to make small corrections

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to that solution. And then I can describe all kinds of

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crap. So, for example,

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condensed matter physics talks about matter.

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So I ask you, has anybody ever proved that the table you're

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sitting at exists?

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Is there such a thing as a table made out of wood? In fact,

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is there such a thing as wood? The answer is no.

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Use wood to build houses. I use engineering

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principles to calculate the stress and load on a beam.

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How the hell do I do that if I don't know wood exists?

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I describe wood, I assume it exists, I

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characterize it in terms of a bunch of properties,

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and then I can, based on that, make small correction

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calculations again to see how the wood behaves

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when I stand on it. But I have to start from the

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assumption it exists and that there are properties

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I can measure for it and make prediction based on that.

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But the first principles thing that would exists, no way.

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Nobody solved that problem. Okay? So I was

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very interested in that because that's sort of a first principles problem,

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right? It's very philosophical, isn't it? It's where the, a

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hard science like physics kind of meets up against.

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Oh, we meet up against soft stuff all the time and

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we fail to solve the problem. But that's okay.

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It, it's. At any rate,

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I was always interested, always after many years in

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phenomenology, I and papers

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published in phenomenology and things like that,

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getting into field theory and, and

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trying to understand from first principles how to solve hard problems

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that, like quantum chromodynamics.

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That intrigued me because we're kind of using up this

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perturbation theory paradigm, okay? It's very

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useful, it's very good. But we're already running into lots of

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problems where it doesn't work. We don't know a problem that's

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approximately like the problem we want to solve.

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So how do you solve it? So I got involved in that. I got involved

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in what's called lattice field theory. And then I said, but how am I going

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to know I'm right? Because

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I could be Wrong in pushing my answer in the one

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known direction. There got to be other problems,

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but there's only one quantum chromodynamics. It's the one we

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live with, it's the one we're made of.

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So I don't know if I'm cheating or not, but there's

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lots of condensed matter problems and they all have different

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answers and many of them are strong coupling problems and you

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can't treat them perturbated. So take the same methods

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and change your field and go look at condensed matter and see if you can

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develop techniques to do that. Then did that for

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a long time and then developed some methods and decided,

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oh, David Horn came into my office and I said,

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oh, this looks interesting. So I can't stay

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in one area now, to me it makes sense why I'm changing to other

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people. It looks like I have no attention span. So that's

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okay because I do this for me. And

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so as long as I see the thread, I'm happy. But that's how I'm here.

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I'm now in biology, quote. But we're

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glad. We're glad that you're here. Glad that we got to learn

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a bunch of stuff today. I think it's going to be really

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exciting to unpack it and to

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have you back because you are just a. Few

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guys, but I'm going to bore you. So. No, I don't feel bored. I

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mean, I'm more fascinated. I'm confused. It's about some things, but,

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like, I'm also fascinated, too, and we want to be respectful of your

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time and. But we'd love to have you back on the show.

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I'm sitting in my office. I have

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Nothing on until 5:00 clock this evening. Awesome. We'll

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definitely have you come back then because again,

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it's just really great information. It's important, it's exciting. I think it's very

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exciting. So, unfortunately, we have a little limitation,

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so. Yeah, but definitely. And so folks can

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reach out to you on LinkedIn and engage with you directly, if you're cool with

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that and let your AI. I don't promise to

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answer everybody, and if they're a crackpot,

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I don't promise to be polite. There you go. That's fair.

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I'm liking that. I like that. Let our

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AI finish the show. And that wraps this quantum

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odyssey on impact. Quantum. A massive thank you to Dr.

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Marvin Weinstein for taking us deep into the fractal jungle of

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biology, data, science and quantum mechanics with

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only his brain, DQC and a suspiciously

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underutilized basement server farm. From classifying

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glioblastomas with 99% accuracy to uncovering

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biocordinates that could revolutionize precision

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medicine. Marvin reminded us that sometimes the biggest

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scientific breakthroughs don't require a billion dollar

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lab, just a stubborn physicist, open source data,

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and the audacity to ask what if? If you enjoyed

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this episode, and really, how could you not? Be sure to

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subscribe, share and let your fellow Quantum Curious friends

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know. And as always, check the show notes for links to

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Marvin's work, ways to connect, and possibly a

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diagram that will make your head spin just a little less.

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Until next time, stay curious, stay entangled,

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and remember, just because you can't observe the Quantum doesn't mean it's

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not observing you. Cheers.

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